#NEXUS [Created Wed Aug 29 08:41:05 2001 by SEQUENCE MONKEY ver. 2.9.0] [SEQUENCE MONKEY concocted by Dan Graf, Ann Arbor, Michigan] [ Dataset from: Huang et al. (2002). Testing the relationships of Chinese freshwater ] [ Unionidae (Bivalvia) based on analysis of partial mitochondrial 16S ] [ rRNA sequences. Journal of Molluscan Studies 68: 359-363. ] BEGIN DATA; DIMENSIONS NTAX=34 NCHAR=330; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE; MATRIX [ 1........|.........|.........|.........|.........|.........| ] lamprotula aattggaggccagtgaaaggcaagactaggaacacctgtgcttttta-tatta-aaaaaa Ptychorhynchus aattggaggccagtgaatggcaagactaggaacacctttacctttta-tacca-aaaaaa Solenaia aattggaggccagtgaatggcaagactaggaacacctatacccttta-tatca-aaaaaa hyriopsis aattggaggccagtgaatggcaagactaggaacacctgtaccttata-cacta-aaaaaa Villosa aattggaggccagtgaatggcaagactagggacatctgtaccctgta-taaaa-aaacaa Lampsilis aattagaggccagtgaatggcaagactagggacatctgtaccctgta-tagaa-aaacaa Potamilus aattcgaggccagtgaatggcaagactaggg-catctgtgccctgta-tagaa-aaataa Ellipsaria aattggaggccagtgaaaggcaagactggggacatctataccctgta-taaaa-gaataa Ptychobranchus aattggaggccagtgaatggcaagactagggacacctgtaccccata-tgaga-aaacaa Leptodea aattgaaggccagtgaatggcaagactagggacacctgtaccctgta-ttaaa-aaataa Medionidus aattggaggccagtgaatggcaagactagg-acacctgtaccttgtg-tgaaa-aaacaa Amblema aattggaggccagtgaatggcaagactagggatacctgtaccctgta-tgtta-aaaaaa Obliquaria aattggaggccagtgaatggcaagactggggatacctataccacgcg-tgata-aaaaaa Plectomerus aattggaggccagtgaatggcaagactagggacacctgtaccctgta-tggca-aaaaaa Megalonaias aattgggggccagtgaatggcaagactaggaacatttgtacctttta-taccg-caaaaa Uniomerus aattggaggccagtgaatggcaagactaggaatacctgtacccttta-tggaa-aaaaaa Pleurobema aattggaggccagtgaatggcaagactaggaatacctgtacccttta-tgaaa-aaaaaa Elliptoideus aattggaggccagtgaatggcaagactaggaacacctgtacccttta-tgtaa-gaaaaa Canodonta aattggaggccagtgaatggcaagactaggaacacctttactttgta-tataa-aaaaaa cristaria aattggaggccagtgaatggcaagactaggaacacctttactttgtggtgtca-aaaaaa alasmidonta aattgaaggccagtgaatggcaagactaggaatatctttactctgtg-tgtaa-aaaaaa Anodonta aattggaggccagtgaatggcaagactaggaacatctttaccat-tg-catattaaaaaa Lasmigona aattgaaggccagtgaatggcaagactaggaacacctttactttgca-tgtag-aaaaaa Anodontoides aattgaaggccagtgaatggcaagactaggaacacctttactttgca-tacca-aaaaaa lanceolaria aattggaggccagtgaatggcaagactaggaatacctgtactttgta-tataa-aaaaaa arconaia aattggaggccagtgaatggcaagactaggaacacctgtactttgta-tataa-aaaaaa schistodesmus aattggaggccagtgaatggcaagactaggaataactgtactttgta-tataa-aaagaa Lepidodesma aattggaggccagtgaatggcaagactaggaatgcctgtactttgtg-tacaa-aaaaaa unio aattggaggccagtgaatggcaagactaggaatagctgtactttgta-tataa-aaagaa cuneopsis aattggaggccagtgaatggcaagactaggaatagctgtactttgta-tacaa-aaagaa Acuticosta aattggaggccagtgaaaggcaacactaggaatacctgtaccttgta-tataa-aaagaa Utterbackia aattggaggccagtgaatggcaagactaggaacacctttaccatatg-tataa-aaaaaa Cumberlandia aattggaggccagtgaacggcaacacggaaaacacctgtatcacaca-tatta-gtaaaa Margaritifera aattggaggccagtgaatggcaacacggaaaacccctgtatcacgta-tatta-ataaaa [ 61.......|.........|.........|.........|.........|.........| ] lamprotula cttttcatctaagtgaaaagacttagataccagaggaagacgaaaagaccccgcggaact Ptychorhynchus cttttcatctaagtgaaaagacttagataatataggaagacgaaaagaccccgcggaact Solenaia cttttcatctaagtgaaaagacttagataatcaaggaagacgaaaagaccccgcggaact hyriopsis cttttcgtctaagtgaaaagacttagataatgaaggaagacgaaaagaccccgcggaact Villosa tttttcatctgagtgaaaagacccagataataaaggaagacgaaaagaccccgcggaact Lampsilis cttttcattcgggtgaaaagacccgtataataaaggaagacgaaaagaccccgcggaact Potamilus cttttcatctgagtgaaaagacccagataataaaggaagacgaaaagaccccgcggaact Ellipsaria ctttccatctgagtgaaaagacccagataataaaggaagacgaaaagaccccgcggaact Ptychobranchus cttttcgtctgagtgaaaagacccagataataaaggaagacgaaaagaccccgcggaact Leptodea tttttcatctgagtgaaaagacccagataacaaaggaagacgaaaagaccccgcggaact Medionidus cttttcatttgggtgaaaagactcaaataataaaggaagacgaaaagaccccgcggaact Amblema cttttcatctgagtgaaaagactcagatagtaaaggaagacgaaaagaccccgcggaact Obliquaria cttttcatttgagtgaaaagactcaaataccaaaagaagacgaaaagaccccgcggaact Plectomerus cttttcatttgagtgaaaagactcaaataacaaaggaagacgaaaagaccccgcggaact Megalonaias cttttcatctgagtgaaaagactcagataatagaggaagacgaaaagaccc-gcggagct Uniomerus cttttcatctgagtgaaaagactcagataacaaaggaagacgaaaagaccccgcggaact Pleurobema cttttcatctgagtgaaaagactcagatagcaaaggaagacgaaaagaccccgcggaact Elliptoideus cttttcatccgagtgaaaagactcggataacacaggaagacgaaaagaccccgcggaact Canodonta tttttcatctaagtgaaaagacttagataacaaaggaagacgaaaagaccccgcggagct cristaria cttttcgtctaagtgaaaagacttagataacaaaggaagacgaaaagaccccgcggagct alasmidonta cttcttatccaagtgaaaaaacttagataataaaagtagacgaaaagaccccgcggagct Anodonta cttttcgtctaagtgaaaaaacttagataataaaggtagacgaaaagaccccgcggaact Lasmigona cttttcatctaagtgaaaaaccttagataataaaggtagacgaaaagaccccgcggaact Anodontoides cttttcgtctaagtgaaaagacttagataacaaaggtagacgaaaagaccccgcggaact lanceolaria tttttcatctaagtgaaaagacttagataaaaaaggaagacgaaaagaccccgcggaact arconaia tttttcatctaagtgaaaagacttagataaaaaaggaagacgaaaagaccccgcggaact schistodesmus tttttcatctaagtgaaaagacttagataataaaggaagacgaaaagaccccgcggaact Lepidodesma cttttcatctaagtgaaaagacttagataatgaaggaagacgaaaagaccccgcggaact unio cttttcgtctaagtgaaaagacttagataacaaaggaagacgaaaagaccccgcggaact cuneopsis tttttcgtctaagtgaaaagacttagataacaaaggaagacgaaaagaccccgcggaact Acuticosta tttttcatctaagtgaaaagacttagatagcaaaggaagacgaaaagaccccgcggaact Utterbackia cttttcgtctaagtgaaaagacttagataataaaggtagacgaaaagaccccgcggaact Cumberlandia ttttatttttgggtgaaaaagcccaaataatcaaggaagataaaaagacc-cgcggagct Margaritifera ttttatttttgggtgaaaaagcccaaataatagaggaagacaaaaagaccacgcggagct [ 121......|.........|.........|.........|.........|.........| ] lamprotula ttaccatctaaaacacctgc-cgcc----cagaagcacaaaagtgtaataggtttgattg Ptychorhynchus ttactccttattataccaac--acc----caaaagcacaag-gtatcaagagtttgattg Solenaia ttactttttcttacactt-c-tgcc----tagagctagaaaagta--aaaagtttgattg hyriopsis ttaccttctcccactccc-c-tgcc----cagaagcacaaaag-accaaaggtttgattg Villosa ttaccttttccagtctccacatact----tagaaata-caaaaaca-aaaggtttgattg Lampsilis ttaccttttccagtatccatatgct----cagaaaca-caaaaaca-aaaggtttgattg Potamilus ttaccttttccagtctccacatgct----caaaaaca-caaaaaca-aaaggtttgattg Ellipsaria ttaccttt-ccagtctccatatgct----cagaaaca-caacaaca-aaaggtttgattg Ptychobranchus ttaccttttctcgtctccatatgct----cagaaaca-caaaaaca-aaaggtttgattg Leptodea ttaccttttctagtctttatatgct----ca-aaaca-taaaaacataaaggtttgattg Medionidus ttaccttttctagtcttcatatgct----cagaaaca-taaaaaca-aaaggtttgattg Amblema ttaccttttc-agtctccacatgct----cagaaacactaaaaaca-aaaggtttgattg Obliquaria ttaccttttctggtgcacacatgct----cagaaacacgcaaaaca--aaggtttgattg Plectomerus ttaccttttccaattttcacacgcc----ctataagcgtaaaaactgaaaggtttgattg Megalonaias ttacctcatccaatcc---cacgcc----tacaagcacaagaaata-agaggtttgattg Uniomerus ttaccttttccagcct-tagctgcc----cacaaacacaaaagaca-aaaggtttgattg Pleurobema ttaccttttccagcct-tagctgcc----cataaacacaaaagaca-aaaggtttgattg Elliptoideus ttaccttttctagtct-catttgtcatactacacacacaaaagaca-caaggtttgattg Canodonta ttacctcttcttatactcttgttca-----cacacttaa-aagtactagaggtttgattg cristaria ttacctcttctcgcgcttctgttta-----cacacttaa-aagtgcttaaggtttgattg alasmidonta ttaccttttcttatactattgtata-----tcctctata-ag-taattaaggtttgattg Anodonta ttaccttttctcatactactgtata-----ccaactcta-aggtatttaaggtttgattg Lasmigona ttaccttctcttgtgctatcataca-----ccaattcta-ag-cactcaaggtttgattg Anodontoides ttaccttttcttgcattactataca-----tttatttcataaagctttaaggtttgattg lanceolaria ttaccttttcttatacccctgtcta-----caaactt-aaaggtctataaggtttgattg arconaia tcaccttttctcatgcctctgtcta-----cacactt-aaaggcctacaaggtttgattg schistodesmus ttaccttttcctgtacttccgtcta-----caaactttaaaagtacatgaggtttgattg Lepidodesma ttaccttttctagtacctctgtcta-----caaactt-aaagctacataaggtttgattg unio ttaccttttcttaaacttctgtcta-----caaactt-aaaggtttaataggtttgattg cuneopsis ttacctcttctcatacttctgccta-----tccgctc-gaaagtatacgaggtttgattg Acuticosta ttaccttttcttatacttacgtcta-----caaactt-aaaagtctataaggtttgattg Utterbackia ttaccttttcgtatacaaccgtgta-----ctcacccca-atgtatataaggtttgattg Cumberlandia tcactttattgggctaagcaaatcct---acagattaagccatgcttacaagtttggttg Margaritifera ttactttgtcaagccaaacaaatctg---ccagat-aggttatgctaataagtttggttg [ 181......|.........|.........|.........|.........|.........| ] lamprotula gggcaatctcggaaccacctaagcttccgaccatcacttaaacgc---atccaaaatttg Ptychorhynchus gggcaatctcggaaccaac-aagcttccgattatcttaataacat---atccaaaatttg Solenaia gggcaatctcggaaccacc-aagcttccgatcctcattataaaag---atctaaaactag hyriopsis gggcaatctcggaaccacc-aagcttccgatttctagcagaaatg---atccaaaatttg Villosa gggcaatctcggaaccatctaaacttccgatttataacataaaaat--atataaaactca Lampsilis gggcaatctcggaaccacccaaacttccgacttacaacataaaaat--atatagaattca Potamilus gggcaatctcggaaccacccaaacttccgacctatcaccaaaatatgtatatataacttg Ellipsaria gggcaatcttggaaccacctaaacttccaacttttatcataaaaca--atacaaaactta Ptychobranchus gggcaatctcggaaccaccaaaacttccgacttataagtaagaga---atataaaactca Leptodea gggcaatctcggaaccacccaaacttccgacttttttaccaaaagt--atacaaaacttg Medionidus gggcaatctcggaaccacccaaacttctga-tccacaaataaaaat--atataaaactta Amblema gggcaatctcggaaccaaccaaacttccga-tctattccacaaaat--atacaaaactat Obliquaria gggcaatctcggaaccaaccaaacttccgacttattaacataaaat--atacgaaattta Plectomerus gggcaatctcggaaccaaccaaacttccga--cactacacaaaagt--atacaaaatttg Megalonaias gggcaatctcggaaccaaccaagcttccgactttattacagaaaa---atataaaactta Uniomerus gggcaatctcggaacaaaccaagcttccgatctcccttaaataaac--atccataacacg Pleurobema gggcaatctcggaacaa-ccaagcttccgatttccttaaacataat--atatacaactag Elliptoideus gggcaatctcggaacaa-ctaagcttccgatctccttaaaacaaag--attcaaaacgcg Canodonta gggcaatcttggaacca-caaagcttccaat-ttttaa-aaaatcc-tattcaaaactta cristaria gggcaatctcggaatcatcaaagcttccgat-tcttta-gaaatca-catctaaaactta alasmidonta gggcaatcttggaaccaataaagcttccaat-tctcaa-taaaatc-tatttaaaattta Anodonta gggcaatcttggaaccaacaaagcttccaaa-ccctga-taaaatt-tatttaaaattta Lasmigona gggcaatcttggaaccaacaaaacttccaatctctcga-ataagcc-tatttaaaactta Anodontoides gggcaatcttggaatcaacaaagcttccacc--tttat-aaaaaac-tatcaaaaattca lanceolaria gggcaatcctggaaccaacaaagcttccaat-tagctt-aaaaacc-tattaaaaatttt arconaia gggcaatcttggaaccaataaagcttccaat-taactt-taagaag-tattaaaaatttt schistodesmus gggcaatcttggaatcaacaaagcttccaat-ttattt-taagcca-tattaaaaattta Lepidodesma gggcaatcttggaaccaacaaagcttccaat-tttttt-aaaacaa-cattcaaaattta unio gggcaatcttggaaccaataaaacttccaat-ttctta-aaataaa-catataaaatatg cuneopsis gggcaatcttggaaccagtaaaacttccaat-tttttt-aaa-aaa-catccaaaattta Acuticosta gggcaatcttggaaccactaaagcttccaat-tccttt-taaaaaa-tatcaaaaattta Utterbackia gggcaatcttggaaccagcaaagcttccaatttcttagctaaaact-tatttagaatttg Cumberlandia gggcaaccctggaatcaccaaagcttccagtcataatt-aagaaacgcatcaaaaacgtc Margaritifera gggcaaccctggaac--ctaaagcttccagtaatcat---agaacttcatcaaaaacatc [ 241......|.........|.........|.........|.........|.........| ] lamprotula atgtagacaataaagcagttaccccggggataacagcgtcatccaacttaagagtacaca Ptychorhynchus gtatagacaaaacagaagttaccccggggataacagcgttatccaacttaagagtacaca Solenaia ataagggcaaaatagaagttaccccggggataacagcgttatccaacttaagagtacaca hyriopsis ataaagaccaaaaagaagttaccccggggataacagcgtaatccaactcaagagtacaca Villosa ataaggaccaaaaagaagttaccccggggataacagcgtaatccaacttgagagtacaca Lampsilis ataaggaccaaaaagaagttgccccggggataacagcgtaatccaacttgagagtacata Potamilus atacggaccaaaaagaagttaccccggggataacagcgtaatccaacttgagagtacaca Ellipsaria ataaggaccaaaaagaagttaccccggggataacagcgtaatccagcttgaaagtacaca Ptychobranchus ataaggactaaaaagaagttaccccggggataacagcgtaatccaacttgagagtacata Leptodea ataagggccaaaaagaagttaccccggggataacagcgtaatccaatttgagagtacaca Medionidus ataaggaccaaaaagaagttaccccggggataacagcgtaatccaatttgagagtacaca Amblema ctaaggaccaaatagaagttaccccggggataacagcgtaatctaatttgagagtacaca Obliquaria ataaagatcaaaaagaagttaccccggggataacagcgtaatccaacttgagagtacgca Plectomerus gtaaagactaaaaagaagttaccccggggataacagcgtaatccaacttgagagtacgca Megalonaias ataaggacaaaaaagaagctaccccggggataacagcgtaatccaacttgagagtacaca Uniomerus ataaggacaaaaaagaagttaccccggggataacagcgtaatccagctcaagagtacaca Pleurobema ataaggacaaaaaagaagttaccccggggataacagcgtaatccagctcaagagtacaca Elliptoideus ataaggacaaaaaagaagttaccccggggataacagcgtaatccagcttgagagtacaca Canodonta ataaggaccaaaaagaagctaccccggggataacagcgtaatccaatttaagagtacata cristaria ctaaggaccaaaaagaagctaccccggggataacagcgtaatccaactcaagagtacata alasmidonta ttaaggaccaaaaagaagttaccccggggataacagcgtaatccaacttaagagtacata Anodonta ttaaggaccaaaaagaagttaccccggggataacagcgtaattcaactaaagagtacata Lasmigona ttaaggactaaaaagaagttaccccggggataacagcgtaatccaattcgagagtacata Anodontoides ataaggaccaaaaagaagttaccccggggataacagcgtaatccagcttaagagtacata lanceolaria ttaaggactaaaaagtagttaccccggggataacagcgtaatctaactcaagagtacata arconaia ttaaggaccaaaaagtagttaccccggggataacagcgtaatctaacttaagagtacata schistodesmus ttaaggactaaaaagtagttaccccggggataacagcgtaatccaacttaagagtacaca Lepidodesma ctaaagaccaaaaagtagttaccccggggataacagcgtaattcaacttaagagtacata unio ttgaggactaaaaagaagttaccccggggataacagcgtaatccaacttaagagtacaca cuneopsis ctaaggaccaaaaagtagttaccccggggataacagcgtaatccaactcaagagtacaca Acuticosta ttaaggaccaaaaagaagttaccccggggataacagcgtaatccaacttaagagtacata Utterbackia ataaggaccaaaaagaagttaccccggggataacagcgtaatccaacttaagagtacata Cumberlandia tt-cggaccaaaaagcagttaccccggggataacagcgtaatccaactcaagagtacaca Margaritifera tt-cggactaaaaagaagttaccccggggataacagcgtaatccaacttaagagtacgca [ 301......|.........|.........|.........|.........|.........| ] lamprotula tcgaaagttgggtttgcgacctcgatgttg Ptychorhynchus tcgaaagttgggtttgcgacctcgatgttg Solenaia tcgaaagttgggtttgcga----------- hyriopsis tcgaaagttgggtttgcgacctcgatgttg Villosa tcgaaagctgggtttgcgacctcgatgttg Lampsilis tcgaaagctgggtttgcgacctcgatgttg Potamilus tcgaaagttgggtttgcgacctcgatgttg Ellipsaria tcgaaagctgggtttgcgacctcgatgttg Ptychobranchus tcgaaagttgggtttgcgacctcgatgttg Leptodea tcgaaagttgggtttgcgacctcgatgttg Medionidus tcgaaaattgggtttgcgacctcgatgttg Amblema tcgaaaattaggtttgcgacctcgatgttg Obliquaria tcgaaagttgggtttgcgacctcgatgttg Plectomerus tcgaaagttgggtttgcgacctcgatgttg Megalonaias tcgaaagttgggtttgcgacctcgatgttg Uniomerus tcgaaagctgggtttgcgacctcgatgttg Pleurobema tcgaaagctgggtttgcgacctcgatgttg Elliptoideus tcgaaagctgggtttgcgacctcgatgttg Canodonta tcgaaaattgggtttgcgacctcgatgttg cristaria tcgaaagttgggtttgcgacctcgatgttg alasmidonta tcgaaagttgggtttgcgacctcgatgttg Anodonta tcgaaagttgggtttgcgacctcgatgttg Lasmigona tcgaaagttgggtttgcgacctcgatgttg Anodontoides tcgaaagttgggtttgcgacctcgatgttg lanceolaria tcgaaagttaggtttgcgacctcgatgttg arconaia tcgaaagttaggtttgcgacctcgatgttg schistodesmus tcgaaagttgggtttgcgacctcgatgttg Lepidodesma tcgaaagttgggtttgcga----------- unio tcgaaagttgggtttgcgacctcgatgttg cuneopsis tcgaaagttgggtttgcgacctcgatgttg Acuticosta tcgaaagttgggtttgcgacctcgatgttg Utterbackia tcgaaagttgggtttgcgacctcgatgttg Cumberlandia tcgaaagttgggtttgcgacctcgatgttg Margaritifera tcgaaagttgggtttgcgacctcgatgttg ; END; [SEQUENCE MONKEY v. 2.9.0 -- Got Monkey?] [http://www.monkeysoftwerks.com] [sequence_monkey@lycos.com]